How to get a list of SNPs/variants between 2+ varieties within a region of interest

The KnowPulse KnowledgeBase focuses on short question-based lessons to help researchers get their work done.

This tutorial is aiming to guide our pulse crop researchers through the search of their interested region or compare between two interested germplasm. The genotypic matrix tool allows researchers to find a list of genotypic data of their interested germplasm, which can be helpful for their own breeding programs.

Some of the things you will learn include:

Getting Started

The KnowPulse KnowledgeBase lessons are hands-on, so participants are encouraged to use their own computers to ensure the proper setup of tools for an efficient workflow. To most effectively use these materials, please make sure to download the data and install everything before working through this lesson.

This workshop assumes no prior experience with the tools covered in the workshop.

To get started, follow the directions in the Setup tab to get access to the required software and data for this workshop.


Genomic Data


Setup Download files required for the lesson
00:00 1. How to use lentil genotypic matrix tool to find genotypic data for your reference germplasm How to find genotypic data for the given germplasm?
00:10 2. How to compare two germplasm and how to find varients from the interested region How to search for sequence varients between two selected germplasm?
How to view genome within a given region?
00:30 3. How to see subset of your interested set of varients How to use additional filter criteria section to help find subset?
00:40 Finish

The actual schedule may vary slightly depending on the topics and exercises chosen by the instructor.